recipe bioconductor-ggtools

software and data for analyses in genetics of gene expression and/or DNA methylation

Homepage

https://bioconductor.org/packages/3.9/bioc/html/GGtools.html

License

Artistic-2.0

Recipe

/bioconductor-ggtools/meta.yaml

Links

biotools: ggtools

package bioconductor-ggtools

(downloads) docker_bioconductor-ggtools

Versions

5.18.0-0, 5.16.0-0, 5.14.0-0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-biostrings

>=2.50.0,<2.51.0

Depends bioconductor-genomeinfodb

>=1.18.0,<1.19.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-ggbase

>=3.44.0,<3.45.0

Depends bioconductor-gviz

>=1.26.0,<1.27.0

Depends bioconductor-homo.sapiens

>=1.3.0,<1.4.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-rsamtools

>=1.34.0,<1.35.0

Depends bioconductor-rtracklayer

>=1.42.0,<1.43.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-snpstats

>=1.32.0,<1.33.0

Depends bioconductor-variantannotation

>=1.28.0,<1.29.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-biglm

Depends r-bit

Depends r-data.table

Depends r-ff

Depends r-ggplot2

Depends r-hexbin

Depends r-iterators

Depends r-reshape2

Depends r-rocr

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ggtools

and update with:

conda update bioconductor-ggtools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ggtools:<tag>

(see bioconductor-ggtools/tags for valid values for <tag>)