recipe bioconductor-gpart

Human genome partitioning of dense sequencing data by identifying haplotype blocks

Homepage

https://bioconductor.org/packages/3.11/bioc/html/gpart.html

License

MIT + file LICENSE

Recipe

/bioconductor-gpart/meta.yaml

we provide a new SNP sequence partitioning method which partitions the whole SNP sequence based on not only LD block structures but also gene location information. The LD block construction for GPART is performed using Big-LD algorithm, with additional improvement from previous version reported in Kim et al.(2017). We also add a visualization tool to show the LD heatmap with the information of LD block boundaries and gene locations in the package.

package bioconductor-gpart

(downloads) docker_bioconductor-gpart

Versions

1.6.0-01.4.0-01.2.0-11.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gpart

and update with:

conda update bioconductor-gpart

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gpart:<tag>

(see bioconductor-gpart/tags for valid values for <tag>)