recipe bioconductor-htseqtools

We provide efficient, easy-to-use tools for High-Throughput Sequencing (ChIP-seq, RNAseq etc.). These include MDS plots (analogues to PCA), detecting inefficient immuno-precipitation or over-amplification artifacts, tools to identify and test for genomic regions with large accumulation of reads, and visualization of coverage profiles.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/htSeqTools.html

License

GPL (>=2)

Recipe

/bioconductor-htseqtools/meta.yaml

Links

biotools: htseqtools, doi: 10.1093/bioinformatics/btr700

package bioconductor-htseqtools

(downloads) docker_bioconductor-htseqtools

Versions

1.31.0-1, 1.30.0-0, 1.28.3-0, 1.26.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-htseqtools

and update with:

conda update bioconductor-htseqtools

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-htseqtools:<tag>

(see bioconductor-htseqtools/tags for valid values for <tag>)