recipe bioconductor-imagehts

Analysis of high-throughput microscopy-based screens

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/imageHTS.html

License:

LGPL-2.1

Recipe:

/bioconductor-imagehts/meta.yaml

imageHTS is an R package dedicated to the analysis of high-throughput microscopy-based screens. The package provides a modular and extensible framework to segment cells, extract quantitative cell features, predict cell types and browse screen data through web interfaces. Designed to operate in distributed environments, imageHTS provides a standardized access to remote data and facilitates the dissemination of high-throughput microscopy-based datasets.

package bioconductor-imagehts

Versions:

1.48.0-0,  1.44.0-0,  1.42.0-0,  1.38.0-0,  1.36.0-0,  1.34.0-1,  1.32.0-0,  1.30.0-0,  1.26.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-cellhts2 >=2.62.0,<2.63.0

• bioconductor-ebimage >=4.40.0,<4.41.0

• bioconductor-vsn >=3.66.0,<3.67.0

• r-base >=4.2,<4.3.0a0

• r-e1071

• r-hwriter

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-imagehts

and update with:

conda update bioconductor-imagehts

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-imagehts:<tag>

(see bioconductor-imagehts/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-imagehts/README.html)