bioconductor-imagehts

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imageHTS is an R package dedicated to the analysis of high-throughput microscopy-based screens. The package provides a modular and extensible framework to segment cells, extract quantitative cell features, predict cell types and browse screen data through web interfaces. Designed to operate in distributed environments, imageHTS provides a standardized access to remote data and facilitates the dissemination of high-throughput microscopy-based datasets.

Home http://bioconductor.org/packages/3.7/bioc/html/imageHTS.html
Versions 1.30.0, 1.26.0
License LGPL-2.1
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-imagehts
Links biotools: imagehts, doi: 10.1038/nmeth.3252

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-imagehts

and update with:

conda update bioconductor-imagehts

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-imagehts.