recipe bioconductor-impulsede

Detection of DE genes in time series data using impulse models

Homepage

https://bioconductor.org/packages/3.11/bioc/html/ImpulseDE.html

License

GPL-3

Recipe

/bioconductor-impulsede/meta.yaml

Links

biotools: impulsede, doi: 10.1093/bioinformatics/btw665

ImpulseDE is suited to capture single impulse-like patterns in high throughput time series datasets. By fitting a representative impulse model to each gene, it reports differentially expressed genes whether across time points in a single experiment or between two time courses from two experiments. To optimize the running time, the code makes use of clustering steps and multi-threading.

package bioconductor-impulsede

(downloads) docker_bioconductor-impulsede

Versions

1.13.0-0, 1.12.0-0, 1.10.0-1, 1.10.0-0, 1.8.0-0, 1.6.0-0, 1.4.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-impulsede

and update with:

conda update bioconductor-impulsede

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-impulsede:<tag>

(see bioconductor-impulsede/tags for valid values for <tag>)