recipe bioconductor-linc

This package provides methods to compute co-expression networks of lincRNAs and protein-coding genes. Biological terms associated with the sets of protein-coding genes predict the biological contexts of lincRNAs according to the ‘Guilty by Association’ approach.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/LINC.html

License

Artistic-2.0

Recipe

/bioconductor-linc/meta.yaml

Links

biotools: linc, doi: 10.1038/nmeth.3252

package bioconductor-linc

(downloads) docker_bioconductor-linc

Versions

1.10.0-0, 1.8.0-0, 1.6.0-0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-clusterprofiler

>=3.10.0,<3.11.0

Depends bioconductor-dose

>=3.8.0,<3.9.0

Depends bioconductor-ggtree

>=1.14.0,<1.15.0

Depends bioconductor-org.hs.eg.db

>=3.7.0,<3.8.0

Depends bioconductor-reactomepa

>=1.26.0,<1.27.0

Depends bioconductor-sva

>=3.30.0,<3.31.0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends r-ape

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-ggplot2

Depends r-gridextra

Depends r-png

Depends r-rcpp

>=0.11.0

Depends r-reshape2

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-linc

and update with:

conda update bioconductor-linc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-linc:<tag>

(see bioconductor-linc/tags for valid values for <tag>)