recipe bioconductor-m3d

This package identifies statistically significantly differentially methylated regions of CpGs. It uses kernel methods (the Maximum Mean Discrepancy) to measure differences in methylation profiles, and relates these to inter-replicate changes, whilst accounting for variation in coverage profiles.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/M3D.html

License

Artistic License 2.0

Recipe

/bioconductor-m3d/meta.yaml

Links

biotools: m3d, doi: 10.1093/bioinformatics/btu749

package bioconductor-m3d

(downloads) docker_bioconductor-m3d

Versions

1.16.0-0, 1.14.0-0, 1.12.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-m3d

and update with:

conda update bioconductor-m3d

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-m3d:<tag>

(see bioconductor-m3d/tags for valid values for <tag>)