recipe bioconductor-metaseqr

Provides an interface to several normalization and statistical testing packages for RNA-Seq gene expression data. Additionally, it creates several diagnostic plots, performs meta-analysis by combinining the results of several statistical tests and reports the results in an interactive way.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/metaseqR.html

License

GPL (>= 3)

Recipe

/bioconductor-metaseqr/meta.yaml

package bioconductor-metaseqr

(downloads) docker_bioconductor-metaseqr

Versions

1.22.1-0, 1.22.0-0

Depends bioconductor-bayseq

>=2.16.0,<2.17.0

Depends bioconductor-biomart

>=2.38.0,<2.39.0

Depends bioconductor-deseq

>=1.34.0,<1.35.0

Depends bioconductor-edaseq

>=2.16.0,<2.17.0

Depends bioconductor-edger

>=3.24.0,<3.25.0

Depends bioconductor-limma

>=3.38.0,<3.39.0

Depends bioconductor-noiseq

>=2.26.0,<2.27.0

Depends bioconductor-qvalue

>=2.14.0,<2.15.0

Depends bioconductor-vsn

>=3.50.0,<3.51.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-brew

Depends r-corrplot

Depends r-gplots

Depends r-log4r

Depends r-nbpseq

Depends r-rjson

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-metaseqr

and update with:

conda update bioconductor-metaseqr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-metaseqr:<tag>

(see bioconductor-metaseqr/tags for valid values for <tag>)