recipe bioconductor-methcp

Differential methylation anlsysis for bisulfite sequencing data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/MethCP.html

License

Artistic-2.0

Recipe

/bioconductor-methcp/meta.yaml

MethCP is a differentially methylated region (DMR) detecting method for whole-genome bisulfite sequencing (WGBS) data, which is applicable for a wide range of experimental designs beyond the two-group comparisons, such as time-course data. MethCP identifies DMRs based on change point detection, which naturally segments the genome and provides region-level differential analysis.

package bioconductor-methcp

(downloads) docker_bioconductor-methcp

Versions

1.2.0-01.0.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-methcp

and update with:

conda update bioconductor-methcp

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-methcp:<tag>

(see bioconductor-methcp/tags for valid values for <tag>)