recipe bioconductor-methyanalysis

The methyAnalysis package aims for the DNA methylation data analysis and visualization. A MethyGenoSet class is defined to keep the chromosome location information together with the data. The package also includes functions of estimating the methylation levels from Methy-Seq data.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/methyAnalysis.html

License

Artistic-2.0

Recipe

/bioconductor-methyanalysis/meta.yaml

Links

biotools: methyanalysis, doi: 10.1038/nmeth.3252

package bioconductor-methyanalysis

(downloads) docker_bioconductor-methyanalysis

Versions

1.24.0-0, 1.22.0-0, 1.20.0-0

Depends bioconductor-annotate

>=1.60.0,<1.61.0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-biomart

>=2.38.0,<2.39.0

Depends bioconductor-genefilter

>=1.64.0,<1.65.0

Depends bioconductor-genomeinfodb

>=1.18.0,<1.19.0

Depends bioconductor-genomicfeatures

>=1.34.0,<1.35.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-genoset

>=1.38.0,<1.39.0

Depends bioconductor-gviz

>=1.26.0,<1.27.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-lumi

>=2.34.0,<2.35.0

Depends bioconductor-methylumi

>=2.28.0,<2.29.0

Depends bioconductor-org.hs.eg.db

>=3.7.0,<3.8.0

Depends bioconductor-rtracklayer

>=1.42.0,<1.43.0

Depends bioconductor-summarizedexperiment

>=1.12.0,<1.13.0

Depends bioconductor-variantannotation

>=1.28.0,<1.29.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-methyanalysis

and update with:

conda update bioconductor-methyanalysis

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-methyanalysis:<tag>

(see bioconductor-methyanalysis/tags for valid values for <tag>)