recipe bioconductor-migsa

Massive and Integrative Gene Set Analysis

Homepage

https://bioconductor.org/packages/3.10/bioc/html/MIGSA.html

License

GPL (>= 2)

Recipe

/bioconductor-migsa/meta.yaml

Massive and Integrative Gene Set Analysis. The MIGSA package allows to perform a massive and integrative gene set analysis over several expression and gene sets simultaneously. It provides a common gene expression analytic framework that grants a comprehensive and coherent analysis. Only a minimal user parameter setting is required to perform both singular and gene set enrichment analyses in an integrative manner by means of the best available methods, i.e. dEnricher and mGSZ respectively. The greatest strengths of this big omics data tool are the availability of several functions to explore, analyze and visualize its results in order to facilitate the data mining task over huge information sources. MIGSA package also provides several functions that allow to easily load the most updated gene sets from several repositories.

package bioconductor-migsa

(downloads) docker_bioconductor-migsa

Versions

1.10.0-0, 1.8.1-0, 1.6.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-migsa

and update with:

conda update bioconductor-migsa

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-migsa:<tag>

(see bioconductor-migsa/tags for valid values for <tag>)