recipe bioconductor-mitoode

Implementation of the differential equation model described in “Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay”

Homepage

https://bioconductor.org/packages/3.11/bioc/html/mitoODE.html

License

LGPL

Recipe

/bioconductor-mitoode/meta.yaml

The package contains the methods to fit a cell-cycle model on cell count data and the code to reproduce the results shown in our paper “Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay” by Pau, G., Walter, T., Neumann, B., Heriche, J.-K., Ellenberg, J., & Huber, W., BMC Bioinformatics (2013), 14(1), 308. doi:10.1186/1471-2105-14-308

package bioconductor-mitoode

(downloads) docker_bioconductor-mitoode

Versions

1.25.0-0, 1.24.0-1, 1.22.0-1, 1.22.0-0, 1.20.1-0, 1.20.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mitoode

and update with:

conda update bioconductor-mitoode

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mitoode:<tag>

(see bioconductor-mitoode/tags for valid values for <tag>)