recipe bioconductor-mmnet

This package gives the implementations microbiome metabolic network constructing and analyzing. It introduces a unique metagenomic systems biology approach, mapping metagenomic data to the KEGG global metabolic pathway and constructing a systems-level network. The system-level network and the next topological analysis will be of great help to analysis the various functional properties, including regulation and metabolic functionality of the metagenome.

Homepage

http://bioconductor.org/packages/3.5/bioc/html/mmnet.html

License

GPL (>= 2)

Recipe

/bioconductor-mmnet/meta.yaml

Links

biotools: mmnet, doi: 10.1155/2015/167249

package bioconductor-mmnet

(downloads) docker_bioconductor-mmnet

Versions

1.13.0-0

Depends bioconductor-biobase

Depends bioconductor-keggrest

Depends r-base

3.3.2*

Depends r-biom

Depends r-flexmix

Depends r-ggplot2

Depends r-igraph

Depends r-matrix

Depends r-plyr

Depends r-rcurl

Depends r-reshape2

Depends r-rjsonio

Depends r-stringr

Depends r-xml

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-mmnet

and update with:

conda update bioconductor-mmnet

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mmnet:<tag>

(see bioconductor-mmnet/tags for valid values for <tag>)