recipe bioconductor-nbsplice

Negative Binomial Models to detect Differential Splicing

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/NBSplice.html

License:

GPL (>=2)

Recipe:

/bioconductor-nbsplice/meta.yaml

The package proposes a differential splicing evaluation method based on isoform quantification. It applies generalized linear models with negative binomial distribution to infer changes in isoform relative expression.

package bioconductor-nbsplice

Versions:

1.15.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.1-0,  1.2.0-0, 

1.15.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-0,  1.2.1-0,  1.2.0-0,  1.0.6-0,  1.0.0-0

Depends:

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-edger >=3.40.0,<3.41.0

• r-base >=4.2,<4.3.0a0

• r-car

• r-ggplot2

• r-mass

• r-mppa

• r-reshape2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-nbsplice

and update with:

conda update bioconductor-nbsplice

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-nbsplice:<tag>

(see bioconductor-nbsplice/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-nbsplice/README.html)