recipe bioconductor-nem

The package ‘nem’ allows to reconstruct features of pathways from the nested structure of perturbation effects. It takes as input (1.) a set of pathway components, which were perturbed, and (2.) phenotypic readout of these perturbations (e.g. gene expression, protein expression). The output is a directed graph representing the phenotypic hierarchy.

Homepage

https://bioconductor.org/packages/3.8/bioc/html/nem.html

License

GPL (>= 2)

Recipe

/bioconductor-nem/meta.yaml

Links

biotools: nem, doi: 10.1093/bioinformatics/btq385

package bioconductor-nem

(downloads) docker_bioconductor-nem

Versions

2.56.0-0, 2.54.0-0, 2.52.0-0, 2.50.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-nem

and update with:

conda update bioconductor-nem

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-nem:<tag>

(see bioconductor-nem/tags for valid values for <tag>)