bioconductor-nem

downloads

The package ‘nem’ allows to reconstruct features of pathways from the nested structure of perturbation effects. It takes as input (1.) a set of pathway components, which were perturbed, and (2.) phenotypic readout of these perturbations (e.g. gene expression, protein expression). The output is a directed graph representing the phenotypic hierarchy.

Home http://bioconductor.org/packages/3.6/bioc/html/nem.html
Versions 2.50.0, 2.52.0
License GPL (>= 2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-nem

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-nem

and update with:

conda update bioconductor-nem

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-nem.