recipe bioconductor-netreg

Network-Regularized Regression Models

Homepage

https://bioconductor.org/packages/3.11/bioc/html/netReg.html

License

GPL-3 | BSL-1.0 + file LICENSE

Recipe

/bioconductor-netreg/meta.yaml

netReg fits linear regression models using network-penalization. Graph prior knowledge, in the form of biological networks, is being incorporated into the loss function of the linear model. The networks describe biological relationships such as co-regulation or dependency of the same transcription factors/metabolites/etc. yielding a part sparse and part smooth solution for coefficient profiles.

package bioconductor-netreg

(downloads) docker_bioconductor-netreg

Versions

1.11.0-0, 1.10.0-0, 1.8.0-1, 1.8.0-0, 1.6.0-0, 1.4.0-0, 1.2.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-netreg

and update with:

conda update bioconductor-netreg

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-netreg:<tag>

(see bioconductor-netreg/tags for valid values for <tag>)