bioconductor-netreg

downloads

netReg fits linear regression models using network-penalization. Graph prior knowledge, in the form of biological networks, is being incorporated into the likelihood of the linear model. The networks describe biological relationships such as co-regulation or dependency of the same transcription factors/metabolites/etc. yielding a part sparse and part smooth solution for coefficient profiles.

Home http://bioconductor.org/packages/3.6/bioc/html/netReg.html
Versions 1.2.0
License GPL-3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-netreg

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-netreg

and update with:

conda update bioconductor-netreg

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-netreg.