bioconductor-papi

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The Pathway Activity Profiling - PAPi - is an R package for predicting the activity of metabolic pathways based solely on a metabolomics data set containing a list of metabolites identified and their respective abundances in different biological samples. PAPi generates hypothesis that improves the final biological interpretation. See Aggio, R.B.M; Ruggiero, K. and Villas-Boas, S.G. (2010) - Pathway Activity Profiling (PAPi): from metabolite profile to metabolic pathway activity. Bioinformatics.

Home http://bioconductor.org/packages/3.6/bioc/html/PAPi.html
Versions 1.16.0, 1.18.0
License GPL(>= 2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-papi

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-papi

and update with:

conda update bioconductor-papi

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-papi.