recipe bioconductor-pcot2

Principal Coordinates and Hotelling’s T-Square method

Homepage

https://bioconductor.org/packages/3.11/bioc/html/pcot2.html

License

GPL (>= 2)

Recipe

/bioconductor-pcot2/meta.yaml

Links

biotools: pcot2, doi: 10.1038/nmeth.3252

PCOT2 is a permutation-based method for investigating changes in the activity of multi-gene networks. It utilizes inter-gene correlation information to detect significant alterations in gene network activities. Currently it can be applied to two-sample comparisons.

package bioconductor-pcot2

Versions

1.56.0-0, 1.54.0-0, 1.52.0-1, 1.50.0-0, 1.48.0-0, 1.46.0-0, 1.44.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• r-amap

• r-base >=4.0,<4.1.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-pcot2

and update with:

conda update bioconductor-pcot2

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pcot2:<tag>

(see bioconductor-pcot2/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-pcot2/README.html)