recipe bioconductor-pga

An package for identification of novel peptides by customized database derived from RNA-Seq

Homepage

https://bioconductor.org/packages/3.11/bioc/html/PGA.html

License

GPL-2

Recipe

/bioconductor-pga/meta.yaml

This package provides functions for construction of customized protein databases based on RNA-Seq data with/without genome guided, database searching, post-processing and report generation. This kind of customized protein database includes both the reference database (such as Refseq or ENSEMBL) and the novel peptide sequences form RNA-Seq data.

package bioconductor-pga

(downloads) docker_bioconductor-pga

Versions

1.18.0-01.16.0-01.14.0-01.12.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-pga

and update with:

conda update bioconductor-pga

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-pga:<tag>

(see bioconductor-pga/tags for valid values for <tag>)