recipe bioconductor-polyfit

Add-on to DESeq to improve p-values and q-values

Homepage

https://bioconductor.org/packages/3.11/bioc/html/Polyfit.html

License

GPL (>= 3)

Recipe

/bioconductor-polyfit/meta.yaml

Links

biotools: polyfit, doi: 10.7717/peerj.576

Polyfit is an add-on to the packages DESeq which ensures the p-value distribution is uniform over the interval [0, 1] for data satisfying the null hypothesis of no differential expression, and uses an adpated Storey-Tibshiran method to calculate q-values.

package bioconductor-polyfit

(downloads) docker_bioconductor-polyfit

Versions

1.22.0-01.20.0-01.18.0-11.16.1-01.16.0-01.14.0-01.12.0-01.10.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-polyfit

and update with:

conda update bioconductor-polyfit

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-polyfit:<tag>

(see bioconductor-polyfit/tags for valid values for <tag>)