recipe bioconductor-precisiontrialdrawer

A Tool to Analyze and Design NGS Based Custom Gene Panels

Homepage

https://bioconductor.org/packages/3.10/bioc/html/PrecisionTrialDrawer.html

License

GPL-3

Recipe

/bioconductor-precisiontrialdrawer/meta.yaml

A suite of methods to design umbrella and basket trials for precision oncology.

package bioconductor-precisiontrialdrawer

Versions

1.2.0-0, 1.0.1-0

Depends

• bioconductor-biocparallel >=1.20.0,<1.21.0

• bioconductor-biomart >=2.42.0,<2.43.0

• bioconductor-genomicranges >=1.38.0,<1.39.0

• bioconductor-iranges >=2.20.0,<2.21.0

• bioconductor-lowmacaannotation >=0.99.0,<0.100.0

• bioconductor-s4vectors >=0.24.0,<0.25.0

• r-base >=3.6,<3.7.0a0

• r-brglm

• r-cgdsr

• r-data.table

• r-dt

• r-ggplot2

• r-ggrepel

• r-googlevis

• r-httr

• r-jsonlite

• r-magrittr

• r-matrixstats

• r-rcolorbrewer

• r-reshape2

• r-shiny

• r-shinybs

• r-stringr

• r-xml

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-precisiontrialdrawer

and update with:

conda update bioconductor-precisiontrialdrawer

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-precisiontrialdrawer:<tag>

(see bioconductor-precisiontrialdrawer/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-precisiontrialdrawer/README.html)