-
recipe
bioconductor-probatch
Tools for Diagnostics and Corrections of Batch Effects in Proteomics
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/proBatch.html
- License
GPL-3
- Recipe
These tools facilitate batch effects analysis and correction in high-throughput experiments. It was developed primarily for mass-spectrometry proteomics (DIA/SWATH), but could also be applicable to most omic data with minor adaptations. The package contains functions for diagnostics (proteome/genome-wide and feature-level), correction (normalization and batch effects correction) and quality control. Non-linear fitting based approaches were also included to deal with complex, mass spectrometry-specific signal drifts.
-
package
bioconductor-probatch
¶ -
- Versions
1.6.0-0
,1.4.0-0
,1.2.0-0
,1.0.0-1
- Depends
bioconductor-biobase
>=2.50.0,<2.51.0
bioconductor-preprocesscore
>=1.52.0,<1.53.0
bioconductor-pvca
>=1.30.0,<1.31.0
bioconductor-sva
>=3.38.0,<3.39.0
r-base
>=4.0,<4.1.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-probatch
and update with:
conda update bioconductor-probatch
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-probatch:<tag>
(see bioconductor-probatch/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-probatch/README.html)