- recipe bioconductor-probatch
Tools for Diagnostics and Corrections of Batch Effects in Proteomics
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/proBatch.html
- License:
GPL-3
- Recipe:
These tools facilitate batch effects analysis and correction in high-throughput experiments. It was developed primarily for mass-spectrometry proteomics (DIA/SWATH), but could also be applicable to most omic data with minor adaptations. The package contains functions for diagnostics (proteome/genome-wide and feature-level), correction (normalization and batch effects correction) and quality control. Non-linear fitting based approaches were also included to deal with complex, mass spectrometry-specific signal drifts.
- package bioconductor-probatch¶
-
- Versions:
1.13.0-0
,1.10.0-0
,1.8.0-0
,1.6.0-1
,1.6.0-0
,1.4.0-0
,1.2.0-0
,1.0.0-1
- Depends:
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-preprocesscore
>=1.60.0,<1.61.0
bioconductor-pvca
>=1.38.0,<1.39.0
bioconductor-sva
>=3.46.0,<3.47.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-probatch
and update with:
conda update bioconductor-probatch
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-probatch:<tag>
(see bioconductor-probatch/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-probatch/README.html)