recipe bioconductor-proteomicsannotationhubdata

Transform public proteomics data resources into Bioconductor Data Structures

Homepage

https://bioconductor.org/packages/3.14/bioc/html/ProteomicsAnnotationHubData.html

License

Artistic-2.0

Recipe

/bioconductor-proteomicsannotationhubdata/meta.yaml

Links

biotools: proteomicsannotationhubdata, doi: 10.1038/nmeth.3252

These recipes convert a variety and a growing number of public proteomics data sets into easily-used standard Bioconductor data structures.

package bioconductor-proteomicsannotationhubdata

Versions

1.24.0-0,  1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.12.0-0,  1.8.0-0

Depends

• bioconductor-annotationhub >=3.2.0,<3.3.0

• bioconductor-annotationhubdata >=1.24.0,<1.25.0

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biostrings >=2.62.0,<2.63.0

• bioconductor-genomeinfodb >=1.30.0,<1.31.0

• bioconductor-msnbase >=2.20.0,<2.21.0

• bioconductor-mzr >=2.28.0,<2.29.0

• r-base >=4.1,<4.2.0a0

• r-biocmanager

• r-rcurl

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-proteomicsannotationhubdata

and update with:

conda update bioconductor-proteomicsannotationhubdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-proteomicsannotationhubdata:<tag>

(see bioconductor-proteomicsannotationhubdata/tags for valid values for <tag>)

Download stats

Link to this page

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