recipe bioconductor-proteomicsannotationhubdata

Transform public proteomics data resources into Bioconductor Data Structures

Homepage

https://bioconductor.org/packages/3.13/bioc/html/ProteomicsAnnotationHubData.html

License

Artistic-2.0

Recipe

/bioconductor-proteomicsannotationhubdata/meta.yaml

Links

biotools: proteomicsannotationhubdata, doi: 10.1038/nmeth.3252

These recipes convert a variety and a growing number of public proteomics data sets into easily-used standard Bioconductor data structures.

package bioconductor-proteomicsannotationhubdata

Versions

1.22.0-0,  1.20.0-1,  1.20.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-1,  1.12.0-0,  1.8.0-0

Depends

• bioconductor-annotationhub >=3.0.0,<3.1.0

• bioconductor-annotationhubdata >=1.22.0,<1.23.0

• bioconductor-biobase >=2.52.0,<2.53.0

• bioconductor-biostrings >=2.60.0,<2.61.0

• bioconductor-genomeinfodb >=1.28.0,<1.29.0

• bioconductor-msnbase >=2.18.0,<2.19.0

• bioconductor-mzr >=2.26.0,<2.27.0

• r-base >=4.1,<4.2.0a0

• r-biocmanager

• r-rcurl

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-proteomicsannotationhubdata

and update with:

conda update bioconductor-proteomicsannotationhubdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-proteomicsannotationhubdata:<tag>

(see bioconductor-proteomicsannotationhubdata/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-proteomicsannotationhubdata/README.html)