recipe bioconductor-proteomicsannotationhubdata

Transform public proteomics data resources into Bioconductor Data Structures

Homepage

https://bioconductor.org/packages/3.10/bioc/html/ProteomicsAnnotationHubData.html

License

Artistic-2.0

Recipe

/bioconductor-proteomicsannotationhubdata/meta.yaml

Links

biotools: proteomicsannotationhubdata, doi: 10.1038/nmeth.3252

These recipes convert a variety and a growing number of public proteomics data sets into easily-used standard Bioconductor data structures.

package bioconductor-proteomicsannotationhubdata

Versions

1.16.0-0, 1.14.0-1, 1.12.0-0, 1.8.0-0

Depends

• bioconductor-annotationhub >=2.18.0,<2.19.0

• bioconductor-annotationhubdata >=1.16.0,<1.17.0

• bioconductor-biobase >=2.46.0,<2.47.0

• bioconductor-biostrings >=2.54.0,<2.55.0

• bioconductor-genomeinfodb >=1.22.0,<1.23.0

• bioconductor-msnbase >=2.12.0,<2.13.0

• bioconductor-mzr >=2.20.0,<2.21.0

• r-base >=3.6,<3.7.0a0

• r-biocmanager

• r-rcurl

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-proteomicsannotationhubdata

and update with:

conda update bioconductor-proteomicsannotationhubdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-proteomicsannotationhubdata:<tag>

(see bioconductor-proteomicsannotationhubdata/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-proteomicsannotationhubdata/README.html)