recipe bioconductor-proteomicsannotationhubdata

These recipes convert a variety and a growing number of public proteomics data sets into easily-used standard Bioconductor data structures.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/ProteomicsAnnotationHubData.html

License

Artistic-2.0

Recipe

/bioconductor-proteomicsannotationhubdata/meta.yaml

Links

biotools: proteomicsannotationhubdata, doi: 10.1038/nmeth.3252

package bioconductor-proteomicsannotationhubdata

Versions

1.12.0-0, 1.8.0-0

Depends

• bioconductor-annotationhub >=2.14.0,<2.15.0

• bioconductor-annotationhubdata >=1.12.0,<1.13.0

• bioconductor-biobase >=2.42.0,<2.43.0

• bioconductor-biostrings >=2.50.0,<2.51.0

• bioconductor-genomeinfodb >=1.18.0,<1.19.0

• bioconductor-msnbase >=2.8.0,<2.9.0

• bioconductor-mzr >=2.16.0,<2.17.0

• r-base >=3.5.1,<3.5.2.0a0

• r-biocmanager

• r-rcurl

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-proteomicsannotationhubdata

and update with:

conda update bioconductor-proteomicsannotationhubdata

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-proteomicsannotationhubdata:<tag>

(see bioconductor-proteomicsannotationhubdata/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-proteomicsannotationhubdata/README.html)