bioconductor-qrqc

downloads

Quickly scans reads and gathers statistics on base and quality frequencies, read length, k-mers by position, and frequent sequences. Produces graphical output of statistics for use in quality control pipelines, and an optional HTML quality report. S4 SequenceSummary objects allow specific tests and functionality to be written around the data collected.

Home http://bioconductor.org/packages/3.6/bioc/html/qrqc.html
Versions 1.30.0, 1.32.0
License GPL (>=2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-qrqc

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-qrqc

and update with:

conda update bioconductor-qrqc

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-qrqc.