bioconductor-ramigo

downloads

R interface sending requests to AmiGO visualize, retrieving DAG GO trees, parsing GraphViz DOT format files and exporting GML files for Cytoscape. Also uses RCytoscape to interactively display AmiGO trees in Cytoscape.

Home http://bioconductor.org/packages/3.6/bioc/html/RamiGO.html
Versions 1.22.0, 1.23.0
License Artistic-2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-ramigo

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ramigo

and update with:

conda update bioconductor-ramigo

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-ramigo.