recipe bioconductor-rariant

Identification and Assessment of Single Nucleotide Variants through Shifts in Non-Consensus Base Call Frequencies

Homepage

https://bioconductor.org/packages/3.11/bioc/html/Rariant.html

License

GPL-3

Recipe

/bioconductor-rariant/meta.yaml

Links

biotools: rariant, doi: 10.1038/nmeth.3252

The 'Rariant' package identifies single nucleotide variants from sequencing data based on the difference of binomially distributed mismatch rates between matched samples.

package bioconductor-rariant

(downloads) docker_bioconductor-rariant

Versions

1.24.0-01.22.0-01.20.0-11.18.0-01.16.0-01.14.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rariant

and update with:

conda update bioconductor-rariant

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rariant:<tag>

(see bioconductor-rariant/tags for valid values for <tag>)