recipe bioconductor-rcade

Rcade (which stands for “R-based analysis of ChIP-seq And Differential Expression”) is a tool for integrating ChIP-seq data with differential expression summary data, through a Bayesian framework. A key application is in identifing the genes targeted by a transcription factor of interest - that is, we collect genes that are associated with a ChIP-seq peak, and differential expression under some perturbation related to that TF.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/Rcade.html

License

GPL-2

Recipe

/bioconductor-rcade/meta.yaml

package bioconductor-rcade

(downloads) docker_bioconductor-rcade

Versions

1.26.0-1, 1.24.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rcade

and update with:

conda update bioconductor-rcade

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rcade:<tag>

(see bioconductor-rcade/tags for valid values for <tag>)