bioconductor-ripseeker

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Infer and discriminate RIP peaks from RIP-seq alignments using two-state HMM with negative binomial emission probability. While RIPSeeker is specifically tailored for RIP-seq data analysis, it also provides a suite of bioinformatics tools integrated within this self-contained software package comprehensively addressing issues ranging from post-alignments processing to visualization and annotation.

Home http://bioconductor.org/packages/3.6/bioc/html/RIPSeeker.html
Versions 1.16.0, 1.18.0
License GPL-2
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-ripseeker

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ripseeker

and update with:

conda update bioconductor-ripseeker

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-ripseeker.