recipe bioconductor-ripseeker

Infer and discriminate RIP peaks from RIP-seq alignments using two-state HMM with negative binomial emission probability. While RIPSeeker is specifically tailored for RIP-seq data analysis, it also provides a suite of bioinformatics tools integrated within this self-contained software package comprehensively addressing issues ranging from post-alignments processing to visualization and annotation.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/RIPSeeker.html

License

GPL-2

Recipe

/bioconductor-ripseeker/meta.yaml

Links

biotools: ripseeker

package bioconductor-ripseeker

(downloads) docker_bioconductor-ripseeker

Versions

1.24.0-1, 1.22.0-0, 1.20.0-0, 1.18.0-0, 1.16.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-ripseeker

and update with:

conda update bioconductor-ripseeker

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-ripseeker:<tag>

(see bioconductor-ripseeker/tags for valid values for <tag>)