bioconductor-rmat

downloads

This package is an R version of the package MAT and contains functions to parse and merge Affymetrix BPMAP and CEL tiling array files (using C++ based Fusion SDK and Bioconductor package affxparser), normalize tiling arrays using sequence specific models, detect enriched regions from ChIP-chip experiments. Note: users should have GSL and GenomeGraphs installed. Windows users: ‘consult the README file available in the inst directory of the source distribution for necessary configuration instructions’. Snow Leopard users can take advantage of increase speed with Grand Central Dispatch!

Home http://bioconductor.org/packages/3.6/bioc/html/rMAT.html
Versions 3.26.0, 3.28.0
License Artistic-2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/bioconductor-rmat

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rmat

and update with:

conda update bioconductor-rmat

docker

A Docker container is available at https://quay.io/repository/biocontainers/bioconductor-rmat.