recipe bioconductor-rnaither

Statistical analysis of high-throughput RNAi screens

Homepage

https://bioconductor.org/packages/3.10/bioc/html/RNAither.html

License

Artistic-2.0

Recipe

/bioconductor-rnaither/meta.yaml

Links

biotools: rnaither, doi: 10.1093/bioinformatics/btp014

RNAither analyzes cell-based RNAi screens, and includes quality assessment, customizable normalization and statistical tests, leading to lists of significant genes and biological processes.

package bioconductor-rnaither

Versions

2.34.0-0, 2.32.0-1, 2.30.0-0, 2.28.0-0, 2.24.0-0

Depends

• bioconductor-biomart >=2.42.0,<2.43.0

• bioconductor-geneplotter >=1.64.0,<1.65.0

• bioconductor-limma >=3.42.0,<3.43.0

• bioconductor-prada >=1.62.0,<1.63.0

• bioconductor-rankprod >=3.12.0,<3.13.0

• bioconductor-splots >=1.52.0,<1.53.0

• bioconductor-topgo >=2.37.0,<2.38.0

• r-base >=3.6,<3.7.0a0

• r-car

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rnaither

and update with:

conda update bioconductor-rnaither

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rnaither:<tag>

(see bioconductor-rnaither/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-rnaither/README.html)