recipe bioconductor-rpsixml

Queries, data structure and interface to visualization of interaction datasets. This package inplements the PSI-MI 2.5 standard and supports up to now 8 databases. Further databases supporting PSI-MI 2.5 standard will be added continuously.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/RpsiXML.html

License

LGPL-3

Recipe

/bioconductor-rpsixml/meta.yaml

Links

biotools: rpsixml, doi: 10.1007/978-1-60761-987-1_9

package bioconductor-rpsixml

(downloads) docker_bioconductor-rpsixml

Versions

2.24.0-0, 2.22.0-0, 2.20.0-0

Depends bioconductor-annotate

>=1.60.0,<1.61.0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-graph

>=1.60.0,<1.61.0

Depends bioconductor-hypergraph

>=1.54.0,<1.55.0

Depends bioconductor-rbgl

>=1.58.0,<1.59.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-xml

>=2.4.0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rpsixml

and update with:

conda update bioconductor-rpsixml

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rpsixml:<tag>

(see bioconductor-rpsixml/tags for valid values for <tag>)