recipe bioconductor-rsffreader

rSFFreader reads sequence, qualities and clip point values from sff files generated by Roche 454 and Life Sciences Ion Torrent sequencers into similar classes as are present for fastq files.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/rSFFreader.html

License

Artistic-2.0

Recipe

/bioconductor-rsffreader/meta.yaml

package bioconductor-rsffreader

(downloads) docker_bioconductor-rsffreader

Versions

0.30.0-0

Depends bioconductor-biostrings

>=2.50.0,<2.51.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-shortread

>=1.40.0,<1.41.0

Depends bioconductor-xvector

>=0.22.0,<0.23.0

Depends libgcc-ng

>=7.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-rsffreader

and update with:

conda update bioconductor-rsffreader

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-rsffreader:<tag>

(see bioconductor-rsffreader/tags for valid values for <tag>)