recipe bioconductor-sigpathway

Conducts pathway analysis by calculating the NT_k and NE_k statistics as described in Tian et al. (2005)

Homepage

https://bioconductor.org/packages/3.9/bioc/html/sigPathway.html

License

GPL-2

Recipe

/bioconductor-sigpathway/meta.yaml

Links

biotools: sigpathway, doi: 10.1038/nmeth.3252

package bioconductor-sigpathway

(downloads) docker_bioconductor-sigpathway

Versions

1.52.0-0, 1.50.0-0, 1.48.0-0, 1.46.0-0, 1.44.1-0

Depends
  • libgcc-ng >=7.3.0

  • r-base >=3.5.1,<3.5.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-sigpathway

and update with:

conda update bioconductor-sigpathway

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-sigpathway:<tag>

(see bioconductor-sigpathway/tags for valid values for <tag>)