recipe bioconductor-simpleaffy

Very simple high level analysis of Affymetrix data

Homepage

https://bioconductor.org/packages/3.11/bioc/html/simpleaffy.html

License

GPL (>= 2)

Recipe

/bioconductor-simpleaffy/meta.yaml

Links

biotools: simpleaffy, doi: 10.1093/bioinformatics/bti605

Provides high level functions for reading Affy .CEL files, phenotypic data, and then computing simple things with it, such as t-tests, fold changes and the like. Makes heavy use of the affy library. Also has some basic scatter plot functions and mechanisms for generating high resolution journal figures…

package bioconductor-simpleaffy

(downloads) docker_bioconductor-simpleaffy

Versions

2.64.0-02.62.0-02.60.0-12.58.0-02.56.0-02.54.0-02.52.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-simpleaffy

and update with:

conda update bioconductor-simpleaffy

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-simpleaffy:<tag>

(see bioconductor-simpleaffy/tags for valid values for <tag>)