recipe bioconductor-snplocs.hsapiens.dbsnp141.grch38

SNP locations for Homo sapiens (dbSNP Build 141)






SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 141. The source data files used for this package were created by NCBI on May 1st, 2014, and contain SNPs mapped to reference genome GRCh38. Note that these SNPs can be “injected” in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38. IMPORTANT NOTE: This package is deprecated. Please use a SNPlocs data package based on a more recent dbSNP BUILD instead (e.g. BUILD 144 or BUILD 149). You can call BSgenome::available.SNPs() from R to get the list of available SNPlocs data packages.

package bioconductor-snplocs.hsapiens.dbsnp141.grch38

(downloads) docker_bioconductor-snplocs.hsapiens.dbsnp141.grch38


0.99.11-3, 0.99.11-2, 0.99.11-0

Required By


With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-snplocs.hsapiens.dbsnp141.grch38

and update with:

conda update bioconductor-snplocs.hsapiens.dbsnp141.grch38

or use the docker container:

docker pull<tag>

(see bioconductor-snplocs.hsapiens.dbsnp141.grch38/tags for valid values for <tag>)