recipe bioconductor-sojourner

Statistical analysis of single molecule trajectories

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/sojourner.html

License:

Artistic-2.0

Recipe:

/bioconductor-sojourner/meta.yaml

Single molecule tracking has evolved as a novel new approach complementing genomic sequencing, it reports live biophysical properties of molecules being investigated besides properties relating their coding sequence; here we provided "sojourner" package, to address statistical and bioinformatic needs related to the analysis and comprehension of high throughput single molecule tracking data.

package bioconductor-sojourner

Versions:

1.11.0-0,  1.8.0-2,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-ebimage >=4.40.0,<4.41.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-fitdistrplus

• r-ggplot2

• r-gridextra

• r-lattice

• r-mass

• r-mclust

• r-minpack.lm

• r-mixtools

• r-mltools

• r-nls2

• r-pixmap

• r-plyr

• r-r.matlab

• r-rcpp

• r-reshape2

• r-rlang

• r-sampsurf

• r-scales

• r-shiny

• r-shinyjs

• r-sp

• r-truncnorm

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-sojourner

and update with:

conda update bioconductor-sojourner

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-sojourner:<tag>

(see bioconductor-sojourner/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-sojourner/README.html)