-
recipe
bioconductor-srgnet
SRGnet: An R package for studying synergistic response to gene mutations from transcriptomics data
- Homepage
https://bioconductor.org/packages/3.12/bioc/html/SRGnet.html
- License
GPL-2
- Recipe
We developed SRGnet to analyze synergistic regulatory mechanisms in transcriptome profiles that act to enhance the overall cell response to combination of mutations, drugs or environmental exposure. This package can be used to identify regulatory modules downstream of synergistic response genes, prioritize synergistic regulatory genes that may be potential intervention targets, and contextualize gene perturbation experiments.
-
package
bioconductor-srgnet
¶ -
- Versions
1.16.0-0
,1.14.0-0
,1.12.0-0
,1.10.0-1
,1.8.0-0
- Depends
bioconductor-ebcoexpress
>=1.34.0,<1.35.0
bioconductor-limma
>=3.46.0,<3.47.0
r-base
>=4.0,<4.1.0a0
r-dmwr
>=0.4.1
r-gbm
>=2.1.1
r-pvclust
>=2.0-0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-srgnet
and update with:
conda update bioconductor-srgnet
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-srgnet:<tag>
(see bioconductor-srgnet/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-srgnet/README.html)