recipe bioconductor-tcgabiolinksgui

“TCGAbiolinksGUI: A Graphical User Interface to analyze cancer molecular and clinical data. A demo version of GUI is found in https://tcgabiolinksgui.shinyapps.io/tcgabiolinks/”

Homepage

https://bioconductor.org/packages/3.9/bioc/html/TCGAbiolinksGUI.html

License

GPL (>= 3)

Recipe

/bioconductor-tcgabiolinksgui/meta.yaml

package bioconductor-tcgabiolinksgui

(downloads) docker_bioconductor-tcgabiolinksgui

Versions

1.8.0-0

Depends bioconductor-clusterprofiler

>=3.10.0,<3.11.0

Depends bioconductor-elmer

>=2.6.0,<2.7.0

Depends bioconductor-illuminahumanmethylation27kanno.ilmn12.hg19

>=0.6.0,<0.7.0

Depends bioconductor-illuminahumanmethylation27kmanifest

>=0.4.0,<0.5.0

Depends bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19

>=0.6.0,<0.7.0

Depends bioconductor-illuminahumanmethylation450kmanifest

>=0.4.0,<0.5.0

Depends bioconductor-illuminahumanmethylationepicanno.ilm10b2.hg19

>=0.6.0,<0.7.0

Depends bioconductor-illuminahumanmethylationepicmanifest

>=0.3.0,<0.4.0

Depends bioconductor-maftools

>=1.8.0,<1.9.0

Depends bioconductor-minfi

>=1.28.0,<1.29.0

Depends bioconductor-pathview

>=1.22.0,<1.23.0

Depends bioconductor-summarizedexperiment

>=1.12.0,<1.13.0

Depends bioconductor-tcgabiolinks

>=2.10.0,<2.11.0

Depends bioconductor-tcgabiolinksgui.data

>=1.2.0,<1.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-caret

Depends r-colourpicker

Depends r-data.table

Depends r-downloader

>=0.4

Depends r-dt

Depends r-ggplot2

>=2.1.0

Depends r-ggrepel

Depends r-plotly

Depends r-readr

Depends r-shiny

>=0.14.1

Depends r-shinybs

>=0.61

Depends r-shinydashboard

>=0.5.3

Depends r-shinyfiles

>=0.6.2

Depends r-shinyjs

>=0.7

Depends r-stringr

>=1.1.0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-tcgabiolinksgui

and update with:

conda update bioconductor-tcgabiolinksgui

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tcgabiolinksgui:<tag>

(see bioconductor-tcgabiolinksgui/tags for valid values for <tag>)