recipe bioconductor-tdaracne

To infer gene networks from time-series measurements is a current challenge into bioinformatics research area. In order to detect dependencies between genes at different time delays, we propose an approach to infer gene regulatory networks from time-series measurements starting from a well known algorithm based on information theory. The proposed algorithm is expected to be useful in reconstruction of small biological directed networks from time course data.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/TDARACNE.html

License

GPL-2

Recipe

/bioconductor-tdaracne/meta.yaml

Links

biotools: tdaracne, doi: 10.1186/1471-2105-11-154

package bioconductor-tdaracne

(downloads) docker_bioconductor-tdaracne

Versions

1.32.0-0, 1.30.0-0, 1.28.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-tdaracne

and update with:

conda update bioconductor-tdaracne

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tdaracne:<tag>

(see bioconductor-tdaracne/tags for valid values for <tag>)