recipe bioconductor-trare

Transcriptional Rewiring

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/TraRe.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-trare/meta.yaml

TraRe (Transcriptional Rewiring) is an R package which contains the necessary tools to carry out several functions. Identification of module-based gene regulatory networks (GRN); score-based classification of these modules via a rewiring test; visualization of rewired modules to analyze condition-based GRN deregulation and drop out genes recovering via cliques methodology. For each tool, an html report can be generated containing useful information about the generated GRN and statistical data about the performed tests. These tools have been developed considering sequenced data (RNA-Seq).

package bioconductor-trare

(downloads) docker_bioconductor-trare

Versions:

1.5.0-01.2.0-01.0.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-trare

and update with:

conda update bioconductor-trare

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-trare:<tag>

(see bioconductor-trare/tags for valid values for <tag>)

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