recipe bioconductor-tspair

Top Scoring Pairs for Microarray Classification

Homepage

https://bioconductor.org/packages/3.14/bioc/html/tspair.html

License

GPL-2

Recipe

/bioconductor-tspair/meta.yaml

Links

biotools: tspair, doi: 10.1093/bioinformatics/btp126

These functions calculate the pair of genes that show the maximum difference in ranking between two user specified groups. This "top scoring pair" maximizes the average of sensitivity and specificity over all rank based classifiers using a pair of genes in the data set. The advantage of classifying samples based on only the relative rank of a pair of genes is (a) the classifiers are much simpler and often more interpretable than more complicated classification schemes and (b) if arrays can be classified using only a pair of genes, PCR based tests could be used for classification of samples. See the references for the tspcalc() function for references regarding TSP classifiers.

package bioconductor-tspair

Versions

1.52.0-1,  1.52.0-0,  1.50.0-0,  1.48.0-1,  1.48.0-0,  1.46.0-0,  1.44.0-0,  1.42.0-1,  1.40.0-0, 

1.52.0-1,  1.52.0-0,  1.50.0-0,  1.48.0-1,  1.48.0-0,  1.46.0-0,  1.44.0-0,  1.42.0-1,  1.40.0-0,  1.38.0-0,  1.36.0-0,  1.34.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=10.3.0

• liblapack >=3.8.0,<4.0a0

• r-base >=4.1,<4.2.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-tspair

and update with:

conda update bioconductor-tspair

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tspair:<tag>

(see bioconductor-tspair/tags for valid values for <tag>)

Download stats

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