recipe humann2

HUMAnN2: The HMP Unified Metabolic Analysis Network 2

Homepage

http://huttenhower.sph.harvard.edu/humann2

License

MIT / MIT

Recipe

/humann2/meta.yaml

package humann2

(downloads) docker_humann2

Versions

0.11.2-1, 0.11.2-0, 0.11.1-3, 0.11.1-2, 0.11.1-1, 0.11.1-0, 0.9.9-2, 0.9.9-1, 0.9.9-0, 0.6.1-3, 0.6.1-2, 0.6.1-1, 0.6.1-0, 0.5.0-0

Depends biom-format

Depends bowtie2

>=2.2.5

Depends diamond

>=0.7.10,<0.9.0

Depends matplotlib

Depends metaphlan2

>=2.6.0

Depends numpy

Depends python

>=2.7,<2.8.0a0

Depends samtools

Depends scipy

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install humann2

and update with:

conda update humann2

or use the docker container:

docker pull quay.io/biocontainers/humann2:<tag>

(see humann2/tags for valid values for <tag>)