recipe jellyfish

Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence

Homepage

http://www.genome.umd.edu/jellyfish.html

Developer docs

https://github.com/gmarcais/Jellyfish

License

GPL / GPL-3.0

Recipe

/jellyfish/meta.yaml

Links

biotools: jellyfish

package jellyfish

(downloads) docker_jellyfish

Versions

2.2.10-1, 2.2.10-0, 2.2.6-0, 2.2.3-3, 2.2.3-2, 2.2.3-1, 2.2.3-0, 1.1.12-1, 1.1.12-0, 1.1.11-1, 1.1.11-0

Depends jemalloc

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install jellyfish

and update with:

conda update jellyfish

or use the docker container:

docker pull quay.io/biocontainers/jellyfish:<tag>

(see jellyfish/tags for valid values for <tag>)