recipe maaslin2

MaAsLin2 is comprehensive R package for efficiently determining multivariable association between microbial meta'omic features and clinical metadata.

Homepage:

http://huttenhower.sph.harvard.edu/maaslin2

License:

Custom OSS

Recipe:

/maaslin2/meta.yaml

package maaslin2

versions:

1.16.0-0,  0.99.12-0,  0.99.2-0,  0.99.1-0,  0.3.0-0

depends bioconductor-edger:

depends bioconductor-metagenomeseq:

depends r-base:

>=4.3,<4.4.0a0

depends r-car:

depends r-chemometrics:

depends r-cplm:

depends r-data.table:

depends r-dplyr:

depends r-ggplot2:

depends r-glmmtmb:

depends r-hash:

depends r-lmertest:

depends r-logging:

depends r-mass:

depends r-mumin:

depends r-optparse:

depends r-pbapply:

depends r-pheatmap:

depends r-pscl:

depends r-vegan:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install maaslin2

and update with::

   mamba update maaslin2

To create a new environment, run:

mamba create --name myenvname maaslin2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/maaslin2:<tag>

(see `maaslin2/tags`_ for valid values for ``<tag>``)

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