recipe maaslin2

MaAsLin2 is comprehensive R package for efficiently determining multivariable association between microbial meta'omic features and clinical metadata.

Homepage:

http://huttenhower.sph.harvard.edu/maaslin2

License:

Custom OSS

Recipe:

/maaslin2/meta.yaml

package maaslin2

Versions:

0.99.12-0,  0.99.2-0,  0.99.1-0,  0.3.0-0

Depends:

• bioconductor-edger

• bioconductor-metagenomeseq

• r-base >=3.6,<3.7.0a0

• r-car

• r-chemometrics

• r-cplm

• r-data.table

• r-dplyr

• r-ggplot2

• r-hash

• r-lmertest

• r-logging

• r-mass

• r-mumin

• r-optparse

• r-pbapply

• r-pheatmap

• r-pscl

• r-vegan

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install maaslin2

and update with:

conda update maaslin2

or use the docker container:

docker pull quay.io/biocontainers/maaslin2:<tag>

(see maaslin2/tags for valid values for <tag>)

Download stats

Link to this page

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