recipe metawrap

MetaWRAP is a pipeline for genome-resolved metagenomic data analysis

Homepage

https://github.com/bxlab/metaWRAP

License

MIT

Recipe

/metawrap/meta.yaml

package metawrap

(downloads) docker_metawrap

Versions

1.2-0, 1.1-0, 1.0-0

Depends biopython

1.68.*

Depends blas

2.5.*

Depends blast

2.6.0.*

Depends bmtagger

3.101.*

Depends bowtie2

2.3.5.*

Depends bwa

0.7.17.*

Depends checkm-genome

1.0.12.*

Depends concoct

1.0.0.*

Depends fastqc

0.11.8.*

Depends kraken

1.1.*

Depends krona

2.7.*

Depends matplotlib

2.2.3.*

Depends maxbin2

2.2.6.*

Depends megahit

1.1.3.*

Depends metabat2

2.12.1.*

Depends pandas

0.24.2.*

Depends pplacer

1.1.alpha19.*

Depends prokka

1.13.*

Depends quast

5.0.2.*

Depends r-ggplot2

3.1.0.*

Depends r-recommended

3.5.1.*

Depends salmon

0.13.1.*

Depends samtools

1.9.*

Depends seaborn

0.9.0.*

Depends spades

3.13.0.*

Depends trim-galore

0.5.0.*

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install metawrap

and update with:

conda update metawrap

or use the docker container:

docker pull quay.io/biocontainers/metawrap:<tag>

(see metawrap/tags for valid values for <tag>)