recipe phyluce

Software for UCE (and general) phylogenomics.

Homepage:

https://github.com/faircloth-lab/phyluce

License:

BSD

Recipe:

/phyluce/meta.yaml

Links:

doi: 10.1093/bioinformatics/btv646

package phyluce

Versions:

1.6.8-0,  1.6.7-0,  1.6.6-0,  1.6.5-0,  1.6.4-0,  1.6.3-2,  1.6.3-1,  1.6.3-0,  1.6.2-0

Depends:

• abyss 1.5.*

• bcftools

• bedtools

• biopython

• bowtie

• bwa

• bx-python

• dendropy 3.*

• gatk 3.8.*

• gblocks

• illumiprocessor

• itero

• lastz

• mafft

• muscle

• pandas

• picard

• pysam

• python <3

• pyvcf

• raxml

• samtools

• seqtk

• spades 3.12.*

• trimal

• trinity 2.1.*

• velvet 1.2.*

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install phyluce

and update with:

conda update phyluce

or use the docker container:

docker pull quay.io/biocontainers/phyluce:<tag>

(see phyluce/tags for valid values for <tag>)

Download stats

Link to this page

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