recipe phyluce

Software for UCE (and general) phylogenomics.

Homepage

https://github.com/faircloth-lab/phyluce

License

BSD

Recipe

/phyluce/meta.yaml

Links

doi: 10.1093/bioinformatics/btv646

package phyluce

(downloads) docker_phyluce

Versions

1.6.7-0, 1.6.6-0, 1.6.5-0, 1.6.4-0, 1.6.3-2, 1.6.3-1, 1.6.3-0, 1.6.2-0

Depends abyss

1.5.*

Depends bcftools

Depends bedtools

Depends biopython

Depends bowtie

Depends bwa

Depends bx-python

Depends dendropy

3.*

Depends gatk

3.8.*

Depends gblocks

Depends illumiprocessor

Depends itero

Depends lastz

Depends mafft

Depends muscle

Depends pandas

Depends picard

Depends pysam

Depends python

>=2.7,<2.8.0a0

Depends pyvcf

Depends raxml

Depends samtools

Depends seqtk

Depends spades

3.12.*

Depends trimal

Depends trinity

2.1.*

Depends velvet

1.2.*

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install phyluce

and update with:

conda update phyluce

or use the docker container:

docker pull quay.io/biocontainers/phyluce:<tag>

(see phyluce/tags for valid values for <tag>)