recipe probamconvert

proBAMconvert is a conversion tool to convert common peptide identification files (mzIdentML, pepXML, mzTAB) to the proBAM or proBED format

Homepage

https://github.com/Biobix/proBAMconvert

License

Apache License

Recipe

/probamconvert/meta.yaml

package probamconvert

(downloads) docker_probamconvert

Versions

1.0.2-1, 1.0.1-1, 1.0.0-1, 1.0.0-0

Depends bioservices

Depends cogent

Depends icu

58.*

Depends lxml

Depends matplotlib

Depends mysql-python

Depends numpy

Depends pysam

>=0.9

Depends pyteomics

Depends python

2.7*

Depends xz

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install probamconvert

and update with:

conda update probamconvert

or use the docker container:

docker pull quay.io/biocontainers/probamconvert:<tag>

(see probamconvert/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/probamconvert/README.html)