recipe probamconvert

proBAMconvert is a conversion tool to convert common peptide identification files (mzIdentML, pepXML, mzTAB) to the proBAM or proBED format

Homepage

https://github.com/Biobix/proBAMconvert

License

Apache License

Recipe

/probamconvert/meta.yaml

package probamconvert

Versions

1.0.2-2, 1.0.2-1, 1.0.1-1, 1.0.0-1, 1.0.0-0

Depends

• bioservices

• cogent

• icu 58.*

• lxml

• matplotlib

• mysql-python

• numpy

• pysam >=0.9

• pyteomics

• python <3

• xz

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install probamconvert

and update with:

conda update probamconvert

or use the docker container:

docker pull quay.io/biocontainers/probamconvert:<tag>

(see probamconvert/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/probamconvert/README.html)