recipe r-adegenet

Toolset for the exploration of genetic and genomic data. Adegenet provides formal (S4) classes for storing and handling various genetic data, including genetic markers with varying ploidy and hierarchical population structure (‘genind’ class), alleles counts by populations (‘genpop’), and genome-wide SNP data (‘genlight’). It also implements original multivariate methods (DAPC, sPCA), graphics, statistical tests, simulation tools, distance and similarity measures, and several spatial methods. A range of both empirical and simulated datasets is also provided to illustrate various methods.

Homepage

https://github.com/thibautjombart/adegenet

License

GPL3 / GPL (>= 2)

Recipe

/r-adegenet/meta.yaml

package r-adegenet

(downloads) docker_r-adegenet

Versions

2.1.1-1, 2.1.1-0, 2.1.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-adegenet

and update with:

conda update r-adegenet

or use the docker container:

docker pull quay.io/biocontainers/r-adegenet:<tag>

(see r-adegenet/tags for valid values for <tag>)