r-biomark

downloads

Variable selection methods are provided for several classification methods: the lasso/elastic net, PCLDA, PLSDA, and several t-tests. Two approaches for selecting cutoffs can be used, one based on the stability of model coefficients under perturbation, and the other on higher criticism.

Home https://CRAN.R-project.org/package=BioMark
Versions 0.4.5
License GPL (>= 2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-biomark

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-biomark

and update with:

conda update r-biomark

docker

A Docker container is available at https://quay.io/repository/biocontainers/r-biomark.