recipe r-ebimetagenomics

Functions for querying the EBI Metagenomics Portal <https://www.ebi.ac.uk/metagenomics/>. The current main focus is on taxa abundance data, but the intention is that this package should evolve into a general purpose package for working with EBI Metagenomics data using R.

Homepage

https://CRAN.R-project.org/package=ebimetagenomics

License

LGPL / LGPL-3

Recipe

/r-ebimetagenomics/meta.yaml

package r-ebimetagenomics

(downloads) docker_r-ebimetagenomics

Versions

0.6-1, 0.6-0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-breakaway

Depends r-sads

Depends r-vegan

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-ebimetagenomics

and update with:

conda update r-ebimetagenomics

or use the docker container:

docker pull quay.io/biocontainers/r-ebimetagenomics:<tag>

(see r-ebimetagenomics/tags for valid values for <tag>)